Basic Information
VIS ID
TVIS10017249
Fusion event
HBV-chr17 integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
30070724
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
NC_003977
Start
3084
End
3168
Integrated sequence
CAAATCCGCCTCCTGCCTCCACCAATCGCCAGTCAGGAAGGCAGCCTACCCCGCTGTCTCCACCTTTGAGAAACACTCATCCTCA
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
12433414/12530097 (Hg38)
End
12433505/12530188 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA17A
Nearest miRNA
hsa-mir-1253/Upstream/448101; hsa-mir-10226/Downstream/387080;
Nearest TSS
ENST00000595228/Upstream/328497; ENST00000577679/Downstream/19594;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/508543, chr17-CpG: 70/Downstream/135162
Upstream sequence
TACAACTTTATAATGAACCCCACTTGGGCCACTCCAGGCAGTCATTTCCCTTGAGTTCTCATTCCCTATCTCCAAGTGTCTCCAGAGCTGTGCTGACGTG
Downstream sequence
cacggcctcacaagggtgaaatgaaggtgtcaggcaggatgaattcttatctagaggctgaaggggaagaattttcctctaagctcatttaggttgttgg
Target sequence
TAAGATGCTATAAGACATCTTacaatactcatttattatttcacaattctgtaggtcagaagtcttggagagtttggtggggttctctggt
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate