Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017274
Fusion event
HBV-FAM157B integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Start
169
End
261
Integrated sequence
CATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGT
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
End
141114423/138223973 (Hg38)
Location type
Intron
Target gene
Nearest miRNA
hsa-let-7a-1/Upstream/385360;
Nearest TSS
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/2736, None/Downstream
Upstream sequence
TCCAGTTAGCTGATCCAGCTTAAGGGGAACTGGGTCACCTGCATTGAAGGTCAGAGTGGCCGGTGAGACTTGAATAACAAGCCTGGTGGGGCATATTCCT
Downstream sequence
gatacattcccaagtcagatttacagtttgtttctatactaaattaggttgcgattcttcttgttcttcttcttttttcttttttgaggcggagtctcgc
Target sequence
atttgccttcttggaacttgttttgaacagctggctgccggccattgactgacactcggctgatgtgattggctgaaccgccgctatttgttaccat
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.