hsa-mir-892b _LIHC.png
CCNE1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017302
Fusion event
HBV-CCNE1 integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Start
2863
End
2951
Integrated sequence
TTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACCGCAAATCCAGATTGGGACTTCA
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
End
30303231/29812324 (Hg38)
Location type
Promoter
Target gene
Nearest miRNA
hsa-mir-10395/Upstream/9412873; hsa-let-7e/Downstream/5310376;
Nearest CpG islands
chr19-CpG: 137/Target, None/Upstream, None/Downstream
Nearest cancer related gene
CCNE1(OG, No orient, 0)
Upstream sequence
CACCTCTCCTCCCACTCCAACCCCCAGCACCGCCACGGGAGGCCCTCCGGAAGACAGTCCCACCGTGGCCCCCAAAAGCACCACCTTCCTGAAGAATATC
Downstream sequence
cgggccccgggaggcgacgggccggtgagggcggcgggggcggcgggaccccgggtcgggggtcggcgggtgcccgggTCGCGGGTGACAGGCCACCCCG
Target sequence
gtgcggccgggtcgcgggtccccgggcggcgtcgcggggcgcccgggAGGGTGCTGAGAGCGCGGCGGGGTGGGGTGGAGGGGACACTGAGGCAgcc
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate