hsa-mir-3202 _LIHC.png
PDXK _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017304
Fusion event
HBV-PDXK integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
30070724
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
NC_003977
Start
1058
End
1119
Integrated sequence
CCTTTGTATGCATGTATTCAATCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTT
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
45148209/43728328 (Hg38)
End
45148278/43728397 (Hg38)
Location type
Intron
Target gene
PDXK
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-24-3p ; hsa-mir-760 ; hsa-mir-744-5p ; hsa-mir-484 ; hsa-mir-92a-3p ; hsa-mir-16-5p ; hsa-mir-409-5p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-3926 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-1252-5p ; hsa-mir-214-3p ; hsa-mir-221-5p ; hsa-mir-3190-3p ; hsa-mir-3202 ; hsa-mir-34a-5p ; hsa-mir-34c-5p ; hsa-mir-3619-5p ; hsa-mir-4291 ; hsa-mir-4467 ; hsa-mir-449a ; hsa-mir-449b-5p ; hsa-mir-4533 ; hsa-mir-4690-5p ; hsa-mir-548au-3p ; hsa-mir-6087 ; hsa-mir-6124 ; hsa-mir-651-3p ; hsa-mir-6868-5p ; hsa-mir-761 ; hsa-mir-8073 ; hsa-mir-922
Nearest miRNA
hsa-let-7c/Upstream/118339; hsa-mir-6815/Downstream/1749869;
Nearest TSS
ENST00000624081/Upstream/6636; ENST00000476313/Downstream/333;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/8378, chr21-CpG: 24/Downstream/176
Upstream sequence
TGTGGATCATAGGGCTGACCAGTGGCAGGCGGTGGGAGGGACGCGGGGTGCTTGTGCCCCAGGTTGATCAGGGTGAAGCAGTCACATGATCTCTCCTGTC
Downstream sequence
CTGGGTGGGTGGCTTCGGCTTCTGTGCAGCGCTCACCCTGCTCTCCCCTGGAACGCCTGGAACTAGGGTGGTCAGGCTGGGGTGGAGGAGCTCCCCTGGA
Target sequence
CTCTTTCCTCATTCTGGTTTCCTAAAGTGGTCAGAGGTCTCTGCAAAATAAGCTAAAGGGAGGGTTCTG
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate