SLC47A2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017331
Fusion event
HBV-SLC47A2 integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
30070724
Virus Sequence
Virus name
HBV
Subtype
B
Reference genome
NC_003977
Start
3000
End
3089
Integrated sequence
CATTCGGGCTGGGTTTCACCCCACCGCACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATACTACAAACTTTGCCAGCAAATC
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
19595291/19691978 (Hg38)
End
19595360/19692047 (Hg38)
Location type
Intron
Target gene
SLC47A2
Nearest miRNA
hsa-mir-1180/Upstream/347404; hsa-mir-10226/Downstream/7601863;
Nearest TSS
ENST00000595228/Upstream/17894; ENST00000577087/Downstream/22831;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/42808, chr17-CpG: 32/Downstream/21723
Upstream sequence
ggccaggtgtagtgactcacgcctgtaatcccagcactttgggaggccaatgcgggaggattgcttgagtccaggaattcaagaccagcctgggcaacat
Downstream sequence
tgaaaccccgtctctaccacagatataaaaattagccagatgtggtggtgggcacctgtagtcccagctactcaggaggctgacgcaggagaatcgcttg
Target sequence
cagcactttgggaggcctaggtgggcagatcataaggtcaggaattcgagaccagcctggccaacatgg
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate