hsa-mir-130b-3p _LIHC.png
IL23R _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017372
Fusion event
HBV-IL23R integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
B
Reference genome
Start
520
End
602
Integrated sequence
GGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGT
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
End
67675809/67210126 (Hg38)
Location type
Intron
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/581511; hsa-mir-11399/Downstream/973392;
Upstream sequence
AAGAAAGATGAGGGGCCAGCACCCCACCCTCCCCAGGGTTGTTGACTCCTGCTGGTACTGGCTGTGGCTGAAGTCATCATCATGGAGGCTAACCCTTGGA
Downstream sequence
GATAATCCGAGTAAAAATGAGTTTAAAAAAGTGAACGTCTAGAGAAACAAACTAACCATCCTTAAATGCCAAGGTTAAATTATCTAGTGTCTTAAGAAAG
Target sequence
GATGTATGAATGTTTCTTTTTAAGTGAAAAGTGTATAGTTCAGAGTGTAATATTTATTACCAGTATAGGCCTGAGTCTTAGGTGAGCTTAAAGATGAT
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate