BET1L _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017374
Fusion event
HBV-BET1L integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
B
Reference genome
Start
3115
End
3191
Integrated sequence
GTCAGGAAGGCAGCCTACCCCGCTGTCTCCACCTTTGAGAAACACTCATCCTCAGGCCATGCAGTGG
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
End
175541/175541 (Hg38)
Location type
Intron
Target gene
Nearest miRNA
hsa-let-7a-2/Downstream/33795;
Upstream sequence
TACTTAAATATTTTAGGAAAAAGGATTTGCACTCTTGAACTTAATGCACAAAGCCCTTTAAGATTTTATCCCTACTTGACCCCACAGTTTTTCCCACTCC
Downstream sequence
cgctaaccctaaccctaaccctaatcctaaccctaaccctaaccctaaccctaaccctagcccctaatcctaaccctaacccctaacccctaatcctaac
Target sequence
accctaaccctaacccaaccctaaccctagcccctaatcctaaccctaacccctaacactaaccctaaccctaacgctaa
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
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