BBS7 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017401
Fusion event
HBV-BBS7 integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
30070724
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
NC_003977
Start
2055
End
2147
Integrated sequence
CATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGA
Host Sequence
Chromosome
chr4
Cytoband
q27
Reference genome
GRCh37/hg19
Start
122757615/121836460 (Hg38)
End
122757712/121836557 (Hg38)
Location type
Intron
Target gene
BBS7
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-12113/Upstream/7179606; hsa-mir-1305/Downstream/3670702;
Nearest TSS
ENST00000502981/Upstream/7787; ENST00000567769/Downstream/22466;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/12348, chr4-CpG: 50/Downstream/33488
Upstream sequence
actagggaggctgaggcaggagaatggcgtgaacccaggagggggaggttgcagtgagctgagatcttgccattgcactccagcctgggcgacagagcga
Downstream sequence
ttccaagatatggataaatagctatttattcaacccttcaatcattaatgagtattcaccttagttctacttttctgcttctacaagcaatgctgcaatt
Target sequence
ATACATAGAGGTTTTATCAGCATTTTGtgtgttttatggaattccctccatgttaacatgtataaatcaactcattctttatagtagctgtataata
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate