VISDB Viral Integration Site DataBase

VIS ID

TVIS10017409

Fusion event

HBV-RBM41 integration

Validated

No

Detection method

Capture-NGS platform

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2019

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Start

1640

End

1727

Integrated sequence

TGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAA

Chromosome

chrX

Cytoband

q22.3

Reference genome

Start

End

106350063/107106833 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-592 ; hsa-mir-5000-5p ; hsa-mir-197-3p ; hsa-mir-3613-5p ; hsa-mir-124-5p ; hsa-mir-597-5p ; hsa-mir-511-3p ; hsa-mir-4255 ; hsa-mir-5089-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-7108-3p ; hsa-mir-4707-5p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-6794-3p ; hsa-mir-627-3p ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-138-1-3p ; hsa-mir-4639-3p ; hsa-mir-205-3p ; hsa-mir-5003-3p ; hsa-mir-138-2-3p ; hsa-mir-4665-3p ; hsa-mir-6749-3p ; hsa-mir-3156-3p ; hsa-mir-532-3p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-4301 ; hsa-mir-629-3p ; hsa-mir-8058 ; hsa-mir-5009-5p ; hsa-mir-4279 ; hsa-mir-3124-3p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-4793-5p ; hsa-mir-5196-3p ; hsa-mir-545-5p ; hsa-mir-501-5p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4760-3p ; hsa-mir-4282

Nearest miRNA

hsa-let-7f-2/Upstream/466877; hsa-mir-105-1/Downstream/2948496;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/106410, chrX-CpG: 31/Downstream/11456

Upstream sequence

atcgtacaacatttggctttttatctttggcttctttcacaaagcataatattttaaaggttcatctatgttttagcacaaatcagtacttcattccttt

Downstream sequence

acaggaaggggaacatcatacaccggggcctgttgtggggtggggggagtggggagggatagcattaggagatatacctaatgttaaatgacgagttaat

Target sequence

aaaccaaacactgcatgttctcactcataggtgggaattgaacaatgagaatacatggac