Basic Information
VIS ID
TVIS10017421
Fusion event
HBV-chr16 integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
30070724
Virus Sequence
Virus name
HBV
Subtype
B
Reference genome
NC_003977
Start
2871
End
2964
Integrated sequence
GCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACCGCAAATCCAGATTGGGACTTCAATCCCAACAAGGA
Host Sequence
Chromosome
chr16
Reference genome
GRCh37/hg19
Start
46407343
End
46407445
Location type
intergenic
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Upstream sequence
atgatttcattcgagtacatccaatgattccattcgagtccatttgatgattgcatttgattccatttcattatgattctactagagtccattcaatgac
Downstream sequence
ttcaattccatgatgattctatttgattcaattggttgacatttccattcgattccattcgatgatgattccatttgattccattcaaagatgattccat
Target sequence
ggttccattcaatgatgtttccattcaattcctttcaatgtttccattcaattccatacgatgatgattccatttgatttgattcgacagtgagccattcga
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate