Basic Information
VIS ID
TVIS10017445
Fusion event
HBV-chr16 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2015
PubMed ID
26397742
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1631
End
1807
Host Sequence
Chromosome
chr16
Reference genome
Not given
Start
51320015
End
51319900
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Junction sequence
CCAGGTCTTGCCCAAGGTCTTATATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGATGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAATGATCTTTGTACTTGGAGGCTGTAGGCATAAATTGGTCTGTTCACCCAAAGTGGGATGTCTTTCCCAGGTACCGAAGGAGGAGAAACGCGTTATTTTGGCACACAATCAGCCTTGGTCAATCAAGCCTTCAAGATCAGCCCATAATATGAGGACGTTGTTAGTGCGCCATCTGT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ruan, P., et al. Significance of the quantitative measurement of the chr16: 51320015 integration site in hepatocytes of patients with chronic hepatitis B. Mol Med Rep,2015, 12(5): 6855-6860.
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