CNTN5 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017455
Fusion event
HBV-CNTN5 integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26867494
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
DQ089769.1
Region type
core protein;X protein;
Start
1837
Integrated sequence
AGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTA| |ATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTG
Host Sequence
Chromosome
chr11
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
99039520/99168789 (Hg38)
End
99039520/99168789 (Hg38)
Location type
Intronic
Target gene
CNTN5
Nearest miRNA
hsa-mir-10392/Upstream/2827263; hsa-let-7a-2/Downstream/2351031;
Nearest TSS
ENST00000527297/Upstream/147599; ENST00000530458/Downstream/387350;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/147698, chr11-CpG: 64/Downstream/1518403
Upstream sequence
CCAAAATCCCATCTGGAGGGTAAAGTGGGTGCTCTAGAAAGCCTCCTCTCAAGGCCCAGCTCTTCAAATACAATGAGAATCTGGGGTACAGCTCGGTCCT
Downstream sequence
ACTGCTCACCACCCCCTTCCCAGGcacacacacacggatgcatggacacacacaaccacatgcatggcacacacacatacacatgtgcacagatgcatgc
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.
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