VISDB Viral Integration Site DataBase

VIS ID

TVIS10017461

Fusion event

HBV-GTSF1 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

core protein;X protein;

Start

1818

Integrated sequence

GTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCA| |ACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTAT

Chromosome

chr12

Cytoband

q13.13

Reference genome

Start

End

54850350/54456566 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

Nearest miRNA

hsa-mir-1244-3/Upstream/119252; hsa-let-7i/Downstream/2737938;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/37159, chr12-CpG: 66/Downstream/131583

Upstream sequence

ctcctgagtagctgggattgcaggcattcatcaccacacccaggtaatttttttattatctgtatagacggggtcttgctatgttgcccaggctagtctc

Downstream sequence

gatttcttaatataaaactagacacaagaattctcagaaacttctttgtgatgtgtgtattcaactcacagaggtgaaccttccttttgatagagcagtt