VISDB Viral Integration Site DataBase

VIS ID

TVIS10017464

Fusion event

HBV-TNFAIP2 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

Polymerase;

Start

1258

Integrated sequence

CAACGGTCAGGTCTTTGCCAAGTATTTGCTGACGCAACCCCCACTGGTTGGGGCTTGGCCATAGGCCATCAGCGCATGCGTGGAACCTTTGTGGCTCCTC| |TGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGGGCGAAACTGCTCGGCACCGACAACTCTGTTGTCCTCTCTCGGAA

Chromosome

chr14

Cytoband

q32.32

Reference genome

Start

End

103601621/103135284 (Hg38)

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-335-5p ; hsa-mir-155-5p ; hsa-mir-7-5p ; hsa-mir-16-5p ; hsa-mir-34b-5p ; hsa-mir-449c-5p ; hsa-mir-940 ; hsa-mir-1910-3p ; hsa-mir-2682-5p ; hsa-mir-6511a-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-500a-3p ; hsa-mir-6084 ; hsa-mir-6069 ; hsa-mir-298 ; hsa-mir-6804-3p ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-1306-5p ; hsa-mir-3130-3p ; hsa-mir-8066 ; hsa-mir-184

Nearest miRNA

hsa-mir-1185-1/Upstream/595558; hsa-mir-12121/Downstream/982121;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/2044, chr14-CpG: 71/Downstream/2918

Upstream sequence

TAATACATAAGGATTTTGAAGATTGCAACAATAAATTACCATGTTTTATTCTGACACTGTACATATATTTTGATTTTCAAATTATAGTATTATAACTGTG

Downstream sequence

CCGGAGCATCTTGGACGTCAGCATGGGGGCGCAGGAGCCCTCCCGGCCCCTATTTTCCCTTATAAAGGTTGGTTAGCTTTTCCTGTGGCCTGACCTGCCT