VISDB Viral Integration Site DataBase

VIS ID

TVIS10017489

Fusion event

HBV-FGA integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1805

Integrated sequence

CTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCA| |CCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGA

Chromosome

chr4

Cytoband

q31.3

Reference genome

Start

End

155506947/154585795 (Hg38)

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-409-3p ; hsa-mir-29c-3p ; hsa-mir-144-3p ; hsa-mir-29a-3p ; hsa-mir-29b-3p

Nearest miRNA

hsa-mir-12113/Upstream/2049279; hsa-mir-1305/Downstream/4543007;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/35265, chr4-CpG: 39/Downstream/41037

Upstream sequence

ACAAAGTCTATTTTATTTTCATCTTAATTAGGTTTTTGTATGAATATGCAAGAAGGCATCCTGATTACTCTGTCGTGCTGCTGCTGAGACTTGCCAAGAC

Downstream sequence

CAGTCTCACTGACAAACTCTCCTAACATAGGTGAGAAGAAACCTGGGAATGTTTTTCCAGTTGAGGCAGTGTCGAAGAAGGCAGCTTCATCAGGGTGCCT