VISDB Viral Integration Site DataBase

VIS ID

TVIS10017490

Fusion event

HBV-FGA integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

pre-S1/pre-S2/S;Polymerase;

Start

731

Integrated sequence

AGATTCCTATGGGAGTGGGCCTCAGTCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTT| |CAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAACATCTTGAATCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACAT

Chromosome

chr4

Cytoband

q31.3

Reference genome

Start

End

155506951/154585799 (Hg38)

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-409-3p ; hsa-mir-29c-3p ; hsa-mir-144-3p ; hsa-mir-29a-3p ; hsa-mir-29b-3p

Nearest miRNA

hsa-mir-12113/Upstream/2049283; hsa-mir-1305/Downstream/4543003;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/35269, chr4-CpG: 39/Downstream/41033

Upstream sequence

ATGATTTCGCAGCTTTTGTAGAGAAGTGCTGCAAGGCTGACGATAAGGAGACCTGCTTTGCCGAGGAGGTACTACAGTTCTCTTCATTTTAATATGTCCA

Downstream sequence

CTCACTGACAAACTCTCCTAACATAGGTGAGAAGAAACCTGGGAATGTTTTTCCAGTTGAGGCAGTGTCGAAGAAGGCAGCTTCATCAGGGTGCCTATGG