VISDB Viral Integration Site DataBase

VIS ID

TVIS10017523

Fusion event

HBV-IFIH1 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

core protein;X protein;

Start

1826

Integrated sequence

AGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTC| |ACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATT

Chromosome

chr2

Cytoband

q24.2

Reference genome

Start

End

163125353/162268843 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-424-5p ; hsa-mir-15b-5p ; hsa-mir-29b-3p

Nearest miRNA

hsa-mir-128-1/Upstream/1860961; hsa-mir-10b/Downstream/6314100;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/194474, chr2-CpG: 44/Downstream/75222

Upstream sequence

cgggttgattcaattcaattccattccattccatgccactccattccattcaactccggttgattccattccattccgttccattccgcttctttccatt

Downstream sequence

ctctcaaagtgctgggattgcaggtgtgagccactgcgccagcctacccatttgttttaattctgttcCATAAAATAggtctaaacttccttccacatgg