SLC32A1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017526
Fusion event
HBV-SLC32A1 integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26867494
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
DQ089769.1
Region type
core protein;X protein;
Start
1831
Integrated sequence
GGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTC| |TGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAG
Host Sequence
Chromosome
chr20
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
37355710/38727067 (Hg38)
End
37355710/38727067 (Hg38)
Location type
Intronic
Target gene
SLC32A1
miRNAs that regulate target gene
hsa-mir-148b-3p
Nearest miRNA
hsa-mir-103a-2/Upstream/210435; hsa-mir-1-1/Downstream/2441956;
Nearest TSS
ENST00000382410/Upstream/2605; ENST00000243903/Downstream/21375;
Nearest CpG islands
chr20-CpG: 368/Target, None/Upstream, None/Downstream
Upstream sequence
tcctctctcttattggccagacctgggtcacatgtttgtctctgagccaatcgctggctagagaaatgggatgtgctgactggcttagcctgggtcacat
Downstream sequence
TCTCCTCCCCCAACTCCTCATTCTGTTCCTGTCCCCAGAAACCATCCCGAAGTATCTCCCTTCCCTCCTGTGGCTTCTCCCTATTCTCAGCCCTCTCCCA
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.
Curate