CD14 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017538
Fusion event
HBV-CD14 integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26867494
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
DQ089769.1
Region type
X protein;Polymerase;
Start
1404
Integrated sequence
CCGGTCTGGGGCGAAACTGCTCGGCACCGACAACTCTGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATC| |CTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGACTCTACCGTCCCCTTCTTCGTCTGC
Host Sequence
Chromosome
chr5
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
140011458/140631873 (Hg38)
End
140011458/140631873 (Hg38)
Location type
Exonic
Target gene
CD14
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10397/Upstream/68122; hsa-mir-103a-1/Downstream/15971;
Nearest TSS
ENST00000502646/Upstream/66982; ENST00000509217/Downstream/1778;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/66981, chr5-CpG: 95/Downstream/24
Upstream sequence
TGAGCAGTAATATATAGTCACTCTTAATAGAACTTATTTGTATTCTCTCTCTCTTTCCCCATAAGAAACAAAAACGAAACAAGAAAATGTCATTCTCCAT
Downstream sequence
CCCTTGGAGCAGCACCAGGGTTCCCGACACCCCCACCGACAGGGTCGAACGTGCACAGGCTGGGACCACGCCGGAGTTCATTGAGCCCTCGTGGGGGAGG
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.
Curate