VISDB Viral Integration Site DataBase

VIS ID

TVIS10017542

Fusion event

HBV-IMPG1 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1776

Integrated sequence

GCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGG| |GAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAG

Chromosome

chr6

Cytoband

q14.1

Reference genome

Start

End

76731137/76021420 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-6733-3p ; hsa-mir-1231 ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-1290 ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-7114-3p ; hsa-mir-1180-5p ; hsa-mir-6839-5p ; hsa-mir-378j ; hsa-mir-5581-3p ; hsa-mir-670-3p ; hsa-mir-617

Nearest miRNA

hsa-mir-10398/Upstream/592947; hsa-mir-10524/Downstream/2517843;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/271870, chr6-CpG: 132/Downstream/1441094

Upstream sequence

ATTTATGGTTTGGATAGGGAAAGGGGGACGTCAAGTCAAGGTTTAAAATAGAAAGATTCAGCCTTATTGGGTTTAAAAGAGAGAGGTGCACCCCGGGGCT

Downstream sequence

actcatatttggctcagaataaatctcttcaaatattttacagagttcgacaatttgtcgacaATGAGGACAGTGTTTCCCTTCTTCCACAATTAAATTC