VISDB Viral Integration Site DataBase

VIS ID

TVIS10017544

Fusion event

HBV-C9orf47 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

Polymerase;

Start

2763

Integrated sequence

ACCAAATATTTGCCTTTAGATAAAGGCATTAAACCTTATTATCCTGAACACATAGTTAATCATTACTTCCAAACTAGGCATTATTTACATACTCTGTGGA| |AGGCTGGTATTTTATATAAGAGAGAAACTACCCGCAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACAAGAGYTACAGCATGGGAGGTTGGTCTT

Chromosome

chr9

Cytoband

q22.1

Reference genome

Start

End

91606426/88991511 (Hg38)

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-4643 ; hsa-mir-8485 ; hsa-mir-767-5p ; hsa-mir-873-3p ; hsa-mir-6855-3p ; hsa-mir-4513 ; hsa-mir-4499 ; hsa-mir-4684-5p ; hsa-mir-1251-5p ; hsa-mir-517-5p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-186-3p ; hsa-mir-3613-3p ; hsa-mir-6769a-3p ; hsa-mir-6077

Nearest miRNA

hsa-mir-101-2/Upstream/245606; hsa-let-7a-1/Downstream/320714;

Nearest TSS

Nearest CpG islands

chr9-CpG: 107/Target, None/Upstream, None/Downstream

Upstream sequence

CCCTTAAGGTTTTTTGTGAAGGGGCTTCACAAAATAATTTTTAGAAGACATGAGACAAAATTAgccaggcttggtggcacgcatctgtagtcccagatac

Downstream sequence

ctaaactctagataatggattgataggtggagcaaaccactatgacgcatgtatacctatgtaacaaacctgcacattctgcacatgtatcccagaagtt