VISDB Viral Integration Site DataBase

VIS ID

TVIS10017546

Fusion event

HBV-TAB3 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

core protein;X protein;

Start

1828

Integrated sequence

ACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCAC| |CTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTG

Chromosome

chrX

Cytoband

p21.2

Reference genome

Start

End

30899116/30880999 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-23b-3p ; hsa-mir-195-5p ; hsa-mir-512-5p ; hsa-mir-181a-5p ; hsa-mir-188-5p ; hsa-mir-192-3p ; hsa-mir-5581-3p ; hsa-mir-6872-3p ; hsa-mir-1255b-2-3p ; hsa-mir-4303 ; hsa-mir-3653-3p ; hsa-mir-610 ; hsa-mir-1252-5p ; hsa-mir-6751-3p ; hsa-mir-1199-5p ; hsa-mir-342-3p ; hsa-mir-30a-5p ; hsa-mir-892b

Nearest miRNA

hsa-mir-23c/Upstream/1306641; hsa-let-7f-2/Downstream/1702657;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/227247, chrX-CpG: 77/Downstream/7785

Upstream sequence

TAAAAACAGACTCTAAGATCGCTCTGCACTCAACCCTATTCCCAAACCCTTTTAGCCCATATCTCATCTTATGTTCTGTCAATCCCTTTGATTTTTCGGT

Downstream sequence

tccctcaacaataatatataatgatctattcatacagtggaatagtatacagtaatgagaatgaacagtctacaactacatacgatataaatacatctca