VISDB Viral Integration Site DataBase

VIS ID

TVIS10017567

Fusion event

HBV-FN1 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1785

Integrated sequence

ACGACCGACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTA| |GGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTT

Chromosome

chr2

Cytoband

q35

Reference genome

Start

End

216294066/215429343 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-1-3p ; hsa-let-7g-5p ; hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-218-5p ; hsa-mir-140-3p

Nearest miRNA

hsa-mir-10b/Upstream/1671184; hsa-mir-1244-1/Downstream/2471170;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/116934, chr2-CpG: 43/Downstream/6201

Upstream sequence

ctttctccctttttctgtctctcactgtctgtctctgtctctctatctctctctccccctctctcactgcccccccttttcccccctctctccctcttct

Downstream sequence

AGTCTATGCGTGCATTTATCTGGTAAATAGATTATTTAAATTATAATCCAAATTTGCTCTGTGCCACGATGTGAGTATAGAGGATCTGATGTCTTTGTGA