Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017575
Fusion event
HBV-ITIH4 integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Region type
Polymerase;
Start
1253
Integrated sequence
CTCGGCAACGGTCAGGTCTTTGCCAAGTATTTGCTGACGCAACCCCCACTGGTTGGGGCTTGGCCATAGGCCATCAGCGCATGCGTGGAACCTTTGTGGC| |TCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGGGCGAAACTGCTCGGCACCGACAACTCTGTTGTCCTCTCT
Host Sequence
Chromosome
chr3
Cytoband
p21.1
Reference genome
Start
End
52853973/52819957 (Hg38)
Location type
Exonic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-let-7g/Upstream/525649; hsa-mir-12124/Downstream/26506;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/48845, chr3-CpG: 72/Downstream/77253
Upstream sequence
ATTTATTGATTATTATTACTTAAGGGGAGAAAATCATATTTCTTGTCTAAAATATGCATTGTTTATGTCCCAGTGTTTACTGCCCATAGCACATTTGTAT
Downstream sequence
CTCCCTGGAGATAATATTTGAAGAAAGTGGAACCTGGAAATCAGTGGGACCTGGGTTTGCATCTTGCACCCACCTTCCTGTGGCCCCACTTGGATGGGGA
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.