VISDB Viral Integration Site DataBase

VIS ID

TVIS10017590

Fusion event

HBV-FTL integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

Polymerase;

Start

1176

Integrated sequence

AGCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATATCTGAACCTTTACCCCGTTGCTCGGCAACGGTCAGGTCTTTGC| |CAAGTATTTGCTGACGCAACCCCCACTGGTTGGGGCTTGGCCATAGGCCATCAGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGG

Chromosome

chr19

Cytoband

q13.33

Reference genome

Start

End

49468650/48965393 (Hg38)

Location type

5UTR

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-133a-3p ; hsa-mir-16-5p

Nearest miRNA

hsa-mir-10395/Upstream/1738372; hsa-let-7e/Downstream/44513;

Nearest TSS

Nearest CpG islands

chr19-CpG: 78/Target, None/Upstream, None/Downstream

Upstream sequence

CTCTCACACTACCCCCAGCTTCCACAGCGCGGCACCTGTACCTCCGGGGTGGCGCTGGGGTTGGCTCCATGACCAAGATCTATGGGGGACGTCAGAGAAA

Downstream sequence

CGCCCTCCGATTTCCTCTCCGCTTGCAACCTCCGGGACCATCTTCTCGGCCATCTCCTGCTTCTGGGACCTGCCAGCACCGTTTTTGTGGTTAGCTCCTT