VISDB Viral Integration Site DataBase

VIS ID

TVIS10017621

Fusion event

HBV-ERGIC3 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;Polymerase;

Start

1498

Integrated sequence

TGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGACTCTACCGTCCCCTTCTTC| |GTCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCT

Chromosome

chr20

Cytoband

q11.22

Reference genome

Start

End

34136560/35548807 (Hg38)

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-490-3p ; hsa-let-7b-5p

Nearest miRNA

hsa-mir-103a-2/Upstream/94710; hsa-mir-1-1/Downstream/2967756;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/6518, chr20-CpG: 140/Downstream/51990

Upstream sequence

AGGGCCCCCGCCCGGAAGTAGCTCTCCATGGCAGAGTCGAAGAAGAACTCAGAGAAGGCCACATACACCATCCGCTCTTCCTCCTGCAGCTGGGGCTCCA

Downstream sequence

GTGGCCGGAAACTTCCACTTTGCCCCTGGGAAGAGCTTCCAGCAGTCCCATGTGCACGGTGAGTGATCTGCACTAGCTGGGGAGATTTAGATGCTGGCCA