VISDB Viral Integration Site DataBase

VIS ID

TVIS10017623

Fusion event

HBV-MAGI1 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1792

Integrated sequence

ACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAA| |ATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGC

Chromosome

chr3

Cytoband

p14.1

Reference genome

Start

End

65340519/65354844 (Hg38)

Location type

3UTR

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-34a-5p ; hsa-mir-24-3p ; hsa-mir-324-3p

Nearest miRNA

hsa-let-7g/Upstream/4736974; hsa-mir-12124/Downstream/1870620;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/666563, chr3-CpG: 63/Downstream/1684

Upstream sequence

TTATGAACTTTCATTTGCTGAAGTGATATATAGTTTTTTTGAATGAGGTCTGACTTGAAGAGAAATAGGAGGAAGAAGGAAATTTGTGTAGTCCATTCAG

Downstream sequence

AATTTTTAGCTCTGTACACGCAATGATTGGCTGGttttctttttttttttctttttcctttttttttttcttACAGTACCATGGGAACAACAGTGATTGA