VISDB Viral Integration Site DataBase

VIS ID

TVIS10017637

Fusion event

HBV-XPA integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

Polymerase;

Start

1290

Integrated sequence

CGCAACCCCCACTGGTTGGGGCTTGGCCATAGGCCATCAGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCT| |TGTTTTGCTCGCAGCCGGTCTGGGGCGAAACTGCTCGGCACCGACAACTCTGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTG

Chromosome

chr9

Cytoband

q22.33

Reference genome

Start

End

100459540/97697258 (Hg38)

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-210-3p ; hsa-mir-373-3p ; hsa-mir-192-5p

Nearest miRNA

hsa-let-7a-1/Upstream/333577; hsa-mir-12126/Downstream/531891;

Nearest TSS

Nearest CpG islands

chr9-CpG: 43/Target, None/Upstream, None/Downstream

Upstream sequence

GCAAGTGGTTTTATATCGCATCGGCCTTTCGAAACGAGGAGTACAATAAGTCGGTTCAGGAGATCCAAGCAACCTTCTTTTACTTCACCCCCAACAAGAC

Downstream sequence

ttttttttgagatggagtttcactctgtctcccaggctgaagtgcagtggcatgatctcggctcacttcaacctctgctgcctgagttcaagcgattctc