VISDB Viral Integration Site DataBase

VIS ID

TVIS10017641

Fusion event

HBV-SACM1L integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

B

Reference genome

Region type

core protein;X protein;

Start

1828

Integrated sequence

ACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCAC| |CTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTG

Chromosome

chr3

Cytoband

p21.31

Reference genome

Start

End

45785190/45743698 (Hg38)

Location type

3UTR

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-101-3p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-324-3p ; hsa-mir-92a-3p ; hsa-mir-3692-3p ; hsa-mir-6862-5p ; hsa-mir-4253 ; hsa-mir-3945 ; hsa-mir-141-5p

Nearest miRNA

hsa-mir-12127/Upstream/881717; hsa-let-7g/Downstream/2105857;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/53896, chr3-CpG: 80/Downstream/52290

Upstream sequence

AAGGTAGAAATCTTATAAGCTTTACAACTCTGAAAACATACCTTAACTGTCACAGCAACTAATTCAAAACAAACAAAAAATTCTGCTAAAACCAACAAAG

Downstream sequence

GGAAGATTCCATTGTGCAGAACTGGAGTCTTTACTGACCCGCTTTCCACATCAGCCCAAGGTCTTTTTAATGCCTTTATCCAAAAGCACATCTTGTGCTC