VISDB Viral Integration Site DataBase

VIS ID

TVIS10017645

Fusion event

HBV-STXBP3 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

B

Reference genome

Region type

X protein;

Start

1766

Integrated sequence

TGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTC| |TTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCA

Chromosome

chr1

Cytoband

p13.3

Reference genome

Start

End

109322017/108779395 (Hg38)

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-mir-378a-3p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p

Nearest miRNA

hsa-mir-101-1/Upstream/882091; hsa-mir-11399/Downstream/819498;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/32195, chr1-CpG: 71/Downstream/97449

Upstream sequence

TGGGCTTCTCCCCGCTCCCCTTTAAGCAAGTGAAATGCAAATTCAGATTTGATACCCTGCCCTGAGCCAATCAAAAAAAGCTTTTCACCTGCCATTGGCC

Downstream sequence

aaaggataagattgtcatttactgagatgaagaatattgcaaaatctgctgattttaatataaaaatattataacatttgtggctaggtatagttcatat