VISDB Viral Integration Site DataBase

VIS ID

TVIS10017646

Fusion event

HBV-F11R integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

B

Reference genome

Region type

X protein;Polymerase;

Start

1587

Integrated sequence

TCCCCTTCTTCGTCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTC| |GCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCGACAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAAC

Chromosome

chr1

Cytoband

q23.3

Reference genome

Start

End

160967200/160997410 (Hg38)

Location type

3UTR

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-335-5p ; hsa-mir-145-5p ; hsa-mir-1-3p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6807-5p ; hsa-mir-3613-5p ; hsa-mir-6499-3p ; hsa-mir-6512-5p ; hsa-mir-377-3p ; hsa-mir-4469 ; hsa-mir-342-3p ; hsa-mir-8485 ; hsa-mir-4432 ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-4696 ; hsa-mir-451b ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-92a-3p ; hsa-mir-92b-3p

Nearest miRNA

hsa-mir-101-1/Upstream/1097331; hsa-mir-1182/Downstream/229776;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/195247, chr1-CpG: 41/Downstream/23518

Upstream sequence

AGCTTCAGCTGCTCGATGCTGCTGTTGATGCGGTCGCGGCGCATCTTCTCCACCACCGGCTTCCGCAGCTGCGGGAGGAGGGGGTGTCAGGCTGGCCCGG

Downstream sequence

CACGGCGCAGGGACCCCCGAGGACCGGAGGCCGCGGGGACAGCGCGCCGGGCGAGTCTGGTACTTACTCGGTTTTTCTCTTTGGGGCTGAGCAGCTCCAC