VISDB Viral Integration Site DataBase

VIS ID

TVIS10017652

Fusion event

HBV-SNX6 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

B

Reference genome

Region type

X protein;

Start

1803

Integrated sequence

TACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTT| |CACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATG

Chromosome

chr14

Cytoband

q13.1

Reference genome

Start

End

35050268/34581062 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-155-5p ; hsa-mir-16-5p ; hsa-mir-186-5p ; hsa-mir-15a-5p ; hsa-let-7a-5p ; hsa-mir-98-5p

Nearest miRNA

hsa-mir-208a/Upstream/3566320; hsa-mir-1185-1/Downstream/2371247;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/24321, chr14-CpG: 65/Downstream/48426

Upstream sequence

AGAAGAAGATATTGGTGCTGTTGGACTGGTGTGCCAGCTGGCGGTATAGGCTGAAGGCGAACTCAGCCAGGTTGGGGGTGATCTTGTTGAAGGTTGGGTG

Downstream sequence

CTCATCTTCCTCAATAGAGTTAAACAGAACCATAGCAAGTTAAATATTACCACATGCAGAGATTTAAATCGCCAAACGGTTAACAGTGATTACTCttttt