VISDB Viral Integration Site DataBase

VIS ID

TVIS10017655

Fusion event

HBV-CDH8 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

B

Reference genome

Region type

X protein;

Start

1799

Integrated sequence

GGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTC| |TGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGG

Chromosome

chr16

Cytoband

q21

Reference genome

Start

End

61888371/61854467 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-4469 ; hsa-mir-6832-3p ; hsa-mir-6741-3p ; hsa-mir-6867-3p ; hsa-mir-6817-3p ; hsa-mir-6845-3p ; hsa-mir-7113-3p ; hsa-mir-3667-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-642a-5p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-629-3p ; hsa-mir-4713-5p ; hsa-mir-7110-3p ; hsa-mir-1304-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183

Nearest miRNA

hsa-mir-1225/Upstream/4082115; hsa-mir-11401/Downstream/5347854;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/2099299, chr16-CpG: 117/Downstream/180750

Upstream sequence

CTCACCCAATGAAGCAGTGGGCAGCAGTTAGCACCGCCTCCTCTGACACCAGGGCTCCGCCACAGGCCAGCTGTCCCTGGTGCATCAGCCTGGCCTCCCA

Downstream sequence

tcgcatgggtagaagatctgcatttgataagaggaacttccatgtccaagtcggctacataccccttttatttttcacagtcataagcccctaataagcc