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VISDB
Viral Integration Site DataBase
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TVIS10017663
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017663
Fusion event
HBV-PRIM2 integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26867494
Virus Sequence
Virus name
HBV
Subtype
B
Reference genome
DQ089769.1
Region type
core protein;
Start
1919
Integrated sequence
CTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATA| |AAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGTGATCTCCTCGACACCGCCTCTGCTCTGTATCGGGA
Host Sequence
Chromosome
chr6
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
57257381/57392583 (Hg38)
End
57257381/57392583 (Hg38)
Location type
Intronic
Target gene
PRIM2
miRNAs that regulate target gene
hsa-mir-665
;
hsa-mir-887-5p
;
hsa-mir-6780a-5p
;
hsa-mir-6779-5p
;
hsa-mir-3689c
;
hsa-mir-3689b-3p
;
hsa-mir-3689a-3p
;
hsa-mir-30b-3p
;
hsa-mir-1273h-5p
;
hsa-mir-6788-5p
;
hsa-mir-30c-2-3p
;
hsa-mir-30c-1-3p
;
hsa-mir-4266
;
hsa-mir-6799-5p
;
hsa-mir-6883-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-149-3p
;
hsa-mir-7106-5p
;
hsa-mir-6894-5p
;
hsa-mir-7160-5p
;
hsa-mir-202-3p
;
hsa-mir-98-5p
;
hsa-mir-4500
;
hsa-mir-4458
;
hsa-let-7i-5p
;
hsa-let-7g-5p
;
hsa-let-7f-5p
;
hsa-let-7e-5p
;
hsa-let-7d-5p
;
hsa-let-7c-5p
;
hsa-let-7b-5p
;
hsa-let-7a-5p
;
hsa-mir-6884-5p
;
hsa-mir-485-5p
;
hsa-mir-4487
;
hsa-mir-558
;
hsa-mir-3160-3p
;
hsa-mir-7162-3p
;
hsa-mir-6500-3p
;
hsa-mir-3614-5p
;
hsa-mir-4478
;
hsa-mir-4419b
;
hsa-mir-3929
;
hsa-mir-4779
;
hsa-mir-4695-5p
;
hsa-mir-890
Nearest miRNA
hsa-mir-10398/Upstream/2371; hsa-mir-10524/Downstream/13984377;
Nearest TSS
ENST00000381078/Upstream/12636;
ENST00000421261/Downstream/101272;
Nearest CpG islands
None/Target,
chr6-CpG: 120/Upstream/170070
,
chr6-CpG: 35/Downstream/461293
Upstream sequence
gaactatagtaaccaaaacagcatggtactggcataaaacaaacacagaccaatggaacagaatagagaaccagaaataaattcatacatctacaatgaa
Downstream sequence
TTTCATGGAATAGAAGGGCCACTAATAGCCTAGAGAGGGAGAAGGAAAATATTCGTTTTTTTTTTGTGGATATCCaaatttttatttatttttattattt
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.
Sample Information
×
Sample name
233NT
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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