PRIM2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017663
Fusion event
HBV-PRIM2 integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
B
Reference genome
Region type
core protein;
Start
1919
Integrated sequence
CTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATA| |AAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGTGATCTCCTCGACACCGCCTCTGCTCTGTATCGGGA
Host Sequence
Chromosome
chr6
Cytoband
p11.2
Reference genome
End
57257381/57392583 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10398/Upstream/2371; hsa-mir-10524/Downstream/13984377;
Upstream sequence
gaactatagtaaccaaaacagcatggtactggcataaaacaaacacagaccaatggaacagaatagagaaccagaaataaattcatacatctacaatgaa
Downstream sequence
TTTCATGGAATAGAAGGGCCACTAATAGCCTAGAGAGGGAGAAGGAAAATATTCGTTTTTTTTTTGTGGATATCCaaatttttatttatttttattattt
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.
Curate