VISDB Viral Integration Site DataBase

VIS ID

TVIS10017664

Fusion event

HBV-GRIK2 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

B

Reference genome

Region type

X protein;

Start

1717

Integrated sequence

CCGTGAACGCCCGACAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTG| |TGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGC

Chromosome

chr6

Cytoband

q16.3

Reference genome

Start

End

102395323/101947448 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-1303 ; hsa-mir-3122 ; hsa-mir-3123 ; hsa-mir-3201 ; hsa-mir-3675-5p ; hsa-mir-3913-5p ; hsa-mir-3925-5p ; hsa-mir-450a-1-3p ; hsa-mir-450b-3p ; hsa-mir-4791 ; hsa-mir-5002-5p ; hsa-mir-5089-5p ; hsa-mir-6513-5p ; hsa-mir-6728-5p ; hsa-mir-6751-5p ; hsa-mir-6752-5p ; hsa-mir-6803-5p ; hsa-mir-6835-5p ; hsa-mir-6842-5p ; hsa-mir-6890-5p ; hsa-mir-7110-5p ; hsa-mir-769-3p ; hsa-mir-887-5p

Nearest miRNA

hsa-mir-10398/Upstream/2822752; hsa-mir-1202/Downstream/4836677;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/544350, chr6-CpG: 79/Downstream/2911796

Upstream sequence

AAAAATATTCAGAATCTGGTAAAAAAAACTAACTTTAGTTACTTCTAAATTGAAGATTAATTCTAGATGATTTAATAGTCAAACATTTTTGGTTGTtgag

Downstream sequence

TATGCAGTCTGCATTCCACTAAGTTTCTTAACCTATAAAACAAGTATTTTTTAAGGAGCATTATAAGTACAGAGATTCATGCTAATGGCATTCAGCTCAT