VISDB Viral Integration Site DataBase

VIS ID

TVIS10017673

Fusion event

HBV-SLC30A10 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1798

Integrated sequence

AGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGT| |CTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGG

Chromosome

chr1

Cytoband

q41

Reference genome

Start

End

220097093/219923751 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-1303 ; hsa-mir-526b-5p ; hsa-mir-4539 ; hsa-mir-4724-5p ; hsa-mir-5584-3p ; hsa-mir-129-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-335-3p ; hsa-mir-6862-5p ; hsa-mir-4253 ; hsa-mir-3945 ; hsa-mir-4424 ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-3189-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-29c-3p ; hsa-mir-3612 ; hsa-mir-4327 ; hsa-mir-4459 ; hsa-mir-4537 ; hsa-mir-4695-5p ; hsa-mir-5682 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-665 ; hsa-mir-6840-3p ; hsa-mir-6871-3p

Nearest miRNA

hsa-mir-101-1/Upstream/7846066; hsa-mir-1182/Downstream/194102;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/310531, chr1-CpG: 116/Downstream/4039

Upstream sequence

CAGACTGTAGGCCATGGTTATCGGGTCAATATTTAAAAAGTTGCTGAAAGGAGAGGAAGCTACTTTGGTCATAAGCGAAGAGCAATCACAGCCTCTCCCA

Downstream sequence

TTTTAGTGTCACATATTTATCCAGATTACAGCAGCATTACATCCTCTACTTACTTTTTAAACTCACTGCGACTGCTCCAGTAGGTCTTCCTCATATTCCC