VISDB Viral Integration Site DataBase

VIS ID

TVIS10017679

Fusion event

HBV-DLG2 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

core protein;X protein;

Start

1832

Integrated sequence

GGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCT| |GCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGC

Chromosome

chr11

Cytoband

q14.1

Reference genome

Start

End

83680124/83969081 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-148b-3p

Nearest miRNA

hsa-mir-10392/Upstream/2078245; hsa-let-7a-2/Downstream/2309252;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/682588, chr11-CpG: 24/Downstream/1659218

Upstream sequence

ACTGGATTTTCTGTGGGACAGCTATTAATGCTTAAGGAAAAATAACGTAGAGAACTCTTTCAGTGAACATCAAAAAGCAGGAACACAAGCCAATATAGAC

Downstream sequence

CTTTGAGAACAAAGGTAATTTTCTTTTATATAAATGAGACAATCCAGCTCTCACTCTTCAGAAATAAACAGCAATAGCTATTATTATAAACAGCACGACT