VISDB Viral Integration Site DataBase

VIS ID

TVIS10017699

Fusion event

HBV-ZBTB46 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

core protein;X protein;

Start

1816

Integrated sequence

GTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGT

Chromosome

chr20

Cytoband

q13.33

Reference genome

Start

End

62375569/63744216 (Hg38)

Location type

3UTR

Target gene

miRNAs that regulate target gene

hsa-mir-4792 ; hsa-mir-128-2-5p ; hsa-mir-128-1-5p ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-6782-5p ; hsa-mir-3184-5p ; hsa-mir-4779 ; hsa-mir-4313 ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-6752-3p ; hsa-mir-7108-3p ; hsa-mir-6887-3p ; hsa-mir-6793-3p ; hsa-mir-6729-3p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-500a-3p ; hsa-mir-3686 ; hsa-mir-6804-3p ; hsa-mir-3607-3p ; hsa-mir-4793-3p ; hsa-mir-3130-3p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-6810-5p ; hsa-mir-377-3p ; hsa-mir-3117-3p ; hsa-mir-6845-5p ; hsa-mir-6762-5p ; hsa-mir-4652-5p ; hsa-mir-3191-3p ; hsa-mir-3144-5p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-8089 ; hsa-mir-4700-5p ; hsa-mir-4667-5p ; hsa-mir-3692-5p ; hsa-mir-342-3p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-6516-3p ; hsa-mir-4290 ; hsa-mir-6889-3p ; hsa-mir-361-3p ; hsa-mir-3680-5p ; hsa-mir-6750-3p ; hsa-mir-1204 ; hsa-mir-1291 ; hsa-mir-132-5p ; hsa-mir-23a-5p ; hsa-mir-23b-5p ; hsa-mir-2467-3p ; hsa-mir-29b-1-5p ; hsa-mir-29b-2-5p ; hsa-mir-3127-5p ; hsa-mir-328-3p ; hsa-mir-328-5p ; hsa-mir-3940-3p ; hsa-mir-4271 ; hsa-mir-4446-3p ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4651 ; hsa-mir-4716-3p ; hsa-mir-4725-3p ; hsa-mir-5001-5p ; hsa-mir-608 ; hsa-mir-6132 ; hsa-mir-625-5p ; hsa-mir-663b ; hsa-mir-6752-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6775-3p ; hsa-mir-6780b-5p ; hsa-mir-6793-5p ; hsa-mir-6794-5p ; hsa-mir-6795-5p ; hsa-mir-6798-5p ; hsa-mir-6828-5p ; hsa-mir-6836-5p ; hsa-mir-6842-5p ; hsa-mir-6847-5p ; hsa-mir-6851-3p ; hsa-mir-6885-5p ; hsa-mir-6886-5p ; hsa-mir-6887-5p ; hsa-mir-7109-5p ; hsa-mir-7110-5p ; hsa-mir-762

Nearest miRNA

hsa-mir-1-1/Upstream/457350; hsa-mir-1914/Downstream/175233;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/1216, chr20-CpG: 44/Downstream/2610

Upstream sequence

CGAGAAGTATCTGGAGGATCAAGTCAATGCCGACCTCCCCTGTGAAATCGAGAGAGAGATCCTTGCCTTGAAGCAAAGAATAAGCCAGATGTAATCAGGG

Downstream sequence

GTTTTTGCATTTTCTCAGTTTTTTAAAGAGGAAGATGTGCAAAGTTGGAAGCAGTAAGCTGCGTCTTCTGAGTCAGTTCCCTACGTAGCCCTGGCAGTGT