VISDB Viral Integration Site DataBase

VIS ID

TVIS10017703

Fusion event

HBV-RABL3 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

core protein;X protein;

Start

1827

Integrated sequence

GACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCA| |CCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTT

Chromosome

chr3

Cytoband

q13.33

Reference genome

Start

End

120407207/120688360 (Hg38)

Location type

3UTR

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-4275 ; hsa-mir-4788 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-6793-3p ; hsa-mir-6729-3p ; hsa-mir-8485 ; hsa-mir-329-3p ; hsa-mir-362-3p ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-6883-3p ; hsa-mir-4755-5p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-4524a-3p ; hsa-mir-6823-5p ; hsa-mir-454-5p ; hsa-mir-4781-3p ; hsa-mir-4524b-3p ; hsa-mir-3149 ; hsa-mir-1297 ; hsa-mir-1306-5p ; hsa-mir-150-5p ; hsa-mir-1915-3p ; hsa-mir-1976 ; hsa-mir-26a-5p ; hsa-mir-3653-5p ; hsa-mir-4279 ; hsa-mir-4465 ; hsa-mir-4722-3p ; hsa-mir-4726-3p ; hsa-mir-562 ; hsa-mir-5697 ; hsa-mir-6513-3p ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6764-5p ; hsa-mir-6778-3p ; hsa-mir-6814-5p ; hsa-mir-6840-3p ; hsa-mir-8062

Nearest miRNA

hsa-let-7g/Upstream/292631; hsa-mir-12124/Downstream/361280;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/91717, chr3-CpG: 62/Downstream/219673

Upstream sequence

gggtgaaggcagcacagcacatctatggtgttagcaactgggataacagttaccctttgggggcagcagtgactagcaggggtcatgtggtggcaggggc

Downstream sequence

CAAAGAGGAAGTAAAGAAAGGCTGGAGAACAGTCTAGCTGATGAAAGCTGCTTTAAAAATCCTTTTCCAAATTCCCAAGACTGCCTTTCTAAAAGGACTC