VISDB Viral Integration Site DataBase

VIS ID

TVIS10017713

Fusion event

HBV-SOD2 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

Polymerase;

Start

1162

Integrated sequence

TATGCATGTATACAAGCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATATCTGAACCTTTACCCCGTTGCTCGGCAAC| |GGTCAGGTCTTTGCCAAGTATTTGCTGACGCAACCCCCACTGGTTGGGGCTTGGCCATAGGCCATCAGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCC

Chromosome

chr6

Cytoband

q25.3

Reference genome

Start

End

160114357/159693325 (Hg38)

Location type

upstream

Target gene

miRNAs that regulate target gene

hsa-mir-222-3p ; hsa-mir-377-3p ; hsa-mir-17-3p ; hsa-mir-30a-5p ; hsa-mir-769-3p ; hsa-mir-342-3p ; hsa-mir-4325 ; hsa-mir-212-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-222-5p ; hsa-mir-4662a-5p ; hsa-mir-3129-5p ; hsa-mir-199b-3p ; hsa-mir-199a-3p ; hsa-mir-936 ; hsa-mir-6749-3p ; hsa-mir-4738-3p ; hsa-mir-6731-3p ; hsa-mir-6826-5p ; hsa-mir-6873-5p ; hsa-mir-6124 ; hsa-mir-583 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-4531 ; hsa-mir-7847-3p ; hsa-mir-4764-5p ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-5703 ; hsa-mir-4434 ; hsa-mir-4516 ; hsa-mir-1287-5p ; hsa-mir-3135b ; hsa-mir-3605-5p ; hsa-mir-539-5p ; hsa-mir-764 ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-1265 ; hsa-mir-3914 ; hsa-mir-552-3p ; hsa-mir-4446-5p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-3659 ; hsa-mir-623 ; hsa-mir-6780b-3p ; hsa-mir-4780 ; hsa-mir-197-3p ; hsa-mir-6892-5p ; hsa-mir-3148 ; hsa-mir-1252-5p ; hsa-mir-203a-3p ; hsa-mir-7843-5p ; hsa-mir-6879-5p ; hsa-mir-6735-5p ; hsa-mir-4632-5p ; hsa-mir-4436b-3p ; hsa-mir-3646 ; hsa-mir-651-3p ; hsa-mir-500a-3p ; hsa-mir-6804-3p ; hsa-mir-7977 ; hsa-mir-506-5p ; hsa-mir-892c-5p ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-3144-3p ; hsa-mir-4266 ; hsa-mir-633 ; hsa-mir-3944-5p ; hsa-mir-4424 ; hsa-mir-4495 ; hsa-mir-875-5p ; hsa-mir-6888-5p ; hsa-mir-1179 ; hsa-mir-1252-3p ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-mir-7162-3p ; hsa-let-7a-5p ; hsa-mir-6753-5p ; hsa-mir-1911-3p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-5591-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-409-5p ; hsa-mir-671-5p ; hsa-mir-6730-5p ; hsa-mir-519d-5p ; hsa-mir-125b-1-3p ; hsa-mir-9500 ; hsa-mir-4474-5p ; hsa-mir-4684-3p ; hsa-mir-593-3p ; hsa-mir-301b-5p ; hsa-mir-146a-3p ; hsa-mir-301a-5p ; hsa-mir-483-3p ; hsa-mir-4803 ; hsa-mir-3671 ; hsa-mir-376c-5p ; hsa-mir-376b-5p ; hsa-mir-144-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-106a-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-4638-3p ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-4254 ; hsa-mir-3690 ; hsa-mir-577 ; hsa-mir-10a-3p ; hsa-mir-3121-3p ; hsa-mir-6509-5p ; hsa-mir-4298 ; hsa-mir-1302 ; hsa-mir-183-3p ; hsa-mir-331-5p ; hsa-mir-5681b ; hsa-mir-425-5p ; hsa-mir-4678 ; hsa-mir-513b-5p ; hsa-mir-4765 ; hsa-mir-1236-5p ; hsa-mir-2116-3p ; hsa-mir-3611 ; hsa-mir-561-5p ; hsa-mir-6861-3p ; hsa-mir-6515-3p ; hsa-mir-6757-5p ; hsa-mir-3123 ; hsa-mir-6816-3p ; hsa-mir-5191 ; hsa-mir-490-5p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-450b-3p ; hsa-mir-638 ; hsa-mir-4713-3p ; hsa-mir-4695-3p ; hsa-mir-4786-3p ; hsa-mir-6758-3p ; hsa-mir-340-5p ; hsa-mir-503-3p ; hsa-mir-6861-5p ; hsa-mir-186-3p ; hsa-mir-885-5p ; hsa-mir-3159 ; hsa-mir-551b-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4646-3p ; hsa-mir-4433b-5p ; hsa-mir-339-5p ; hsa-mir-670-3p ; hsa-mir-4752 ; hsa-mir-6833-5p ; hsa-mir-644a ; hsa-mir-3190-3p ; hsa-mir-8053 ; hsa-mir-6717-5p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-145-3p ; hsa-mir-4289 ; hsa-mir-4302 ; hsa-mir-1263 ; hsa-mir-150-3p ; hsa-mir-3941 ; hsa-mir-5689 ; hsa-mir-9-5p ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4668-5p ; hsa-mir-410-3p ; hsa-mir-614 ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-5189-3p ; hsa-mir-6832-3p ; hsa-mir-8080 ; hsa-mir-6771-3p ; hsa-mir-548as-3p ; hsa-mir-505-3p ; hsa-mir-7159-5p ; hsa-mir-610 ; hsa-mir-4272 ; hsa-mir-200b-5p ; hsa-mir-200a-5p ; hsa-mir-421 ; hsa-mir-4709-5p ; hsa-mir-1285-5p ; hsa-mir-5683 ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-4445-3p ; hsa-mir-544a ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548aj-5p ; hsa-mir-4793-3p ; hsa-mir-3130-3p ; hsa-mir-1283 ; hsa-mir-4742-5p ; hsa-mir-545-3p ; hsa-mir-759 ; hsa-mir-4714-3p ; hsa-mir-4698 ; hsa-mir-6871-5p ; hsa-mir-548p ; hsa-mir-5586-3p ; hsa-mir-181c-3p ; hsa-mir-3120-3p ; hsa-mir-4282

Nearest miRNA

hsa-mir-10398/Upstream/928572; hsa-mir-1913/Downstream/6816029;

Nearest TSS

Nearest CpG islands

chr6-CpG: 114/Target, None/Upstream, None/Downstream

Nearby gene

SOD2(+) ;

Nearest cancer related gene

SOD2(TSG, No orient, 0)

Upstream sequence

gcatacccatagctaagctcccacttacaagtgagaacatgcAAaaatcatgatttttaatggctgtttatgttccatcctaaaactacaccatcaatta

Downstream sequence

ccgccccccccccccgcgggccccgccccgcgcccgccgcgcccaaccccgGGGGTGCCCTGCGTGCCTGTCCCGCCCGCCCGCGCTTGCCGTACACCCC