VISDB Viral Integration Site DataBase

VIS ID

TVIS10017715

Fusion event

HBV-HDAC9 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

core protein;

Start

1869

Integrated sequence

GTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGC| |CTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTC

Chromosome

chr7

Cytoband

p21.1

Reference genome

Start

End

18383238/18343615 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-342-3p ; hsa-mir-8485 ; hsa-mir-29a-5p

Nearest miRNA

hsa-mir-1302-6/Upstream/216306; hsa-mir-10399/Downstream/1361743;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/256229, chr7-CpG: 34/Downstream/762634

Upstream sequence

ATGTCCAAACTTTGTGTATTTCAGTTTTAAAAAGAATCTGCAGAATATAATTCTTGGCAATCAGCCAGTAAGTGCCTACACACTTTTCTAAGCACAATTA

Downstream sequence

CTTAATGTACATTTTTAAAAACAGCAAAATATAAAACATAGAAATAAATTTCTACCTTGGATCTAACTAGAGAGCTCTTTTGCCTTCTCTACTTTTCTTG