VISDB Viral Integration Site DataBase

VIS ID

TVIS10017726

Fusion event

HBV-TBC1D4 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

B

Reference genome

Region type

core protein;

Start

2068

Integrated sequence

CTTTCCTTCTATTCGTGATCTCCTCGACACCGCCTCTGCTCTGTATCGGGAGGCCTTAGAGTCTCCGGAACATTGTTCACCTCACCATACAGCACTAAGG| |CAAGCTATTCTGTGTTGGGGTGAGTTGATGAATCTGGCCACCTGGGTGGGAAGTAATTTGGAAGACCCAGCATCCAGGGAATTAGTAGTAAGCTATGTCA

Chromosome

chr13

Cytoband

q22.2

Reference genome

Start

End

75936743/75362607 (Hg38)

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-30a-5p ; hsa-mir-19b-3p ; hsa-mir-29b-2-5p ; hsa-mir-7150 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-1193 ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-8069 ; hsa-mir-4456 ; hsa-mir-4494 ; hsa-mir-4463

Nearest miRNA

hsa-mir-1297/Upstream/9144283; hsa-mir-1267/Downstream/2335405;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/1226926, chr13-CpG: 197/Downstream/118109

Upstream sequence

CCAAGTATAATACATCGTGCCTTCTTACGTCCTTCTTTTGACAAGGCCAGAGTCTAGGACACATAATAAATTATTCATAAAAACCAATACAAAGTTATTT

Downstream sequence

CCCTCCATGTTTTATAATCAGTATTATAAAATAGAAACTGAGTAGTGGTGCAATCCAACCAGGAATAATAAAAAGCAGGAGCTACAGAGAAACTAAGTCT