Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017731
Fusion event
HBV-ZNF232 integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
B
Reference genome
Region type
X protein;
Start
1774
Integrated sequence
CAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACT| |GGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCA
Host Sequence
Chromosome
chr17
Cytoband
p13.2
Reference genome
Start
End
5017843/5114548 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1253/Upstream/144398; hsa-mir-10226/Downstream/1540892;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/2487, chr17-CpG: 83/Downstream/1207
Upstream sequence
ACCCGAGGCAAGGACAGGTGGTAAAATTTCAACTTTATTTGGCCAATGTGTTCAATTCGATTGTGAAATAGAAATGCCTGAAGAACTGTCAGCGTCTGAT
Downstream sequence
gccaggcgcagtggctcacgcctgtaatcccagcactttgggaaaccgaggcgggtggatcagctgggctcaggagttcgagaccagcctggccagcatg
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.