VISDB Viral Integration Site DataBase

VIS ID

TVIS10017734

Fusion event

HBV-ELAVL3 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

B

Reference genome

Region type

X protein;Polymerase;

Start

1581

Integrated sequence

CTACCGTCCCCTTCTTCGTCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTG| |CACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCGACAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAAT

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

11590786/11479971 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-6510-5p ; hsa-mir-3175 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-25-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-658 ; hsa-mir-185-5p ; hsa-mir-5699-5p ; hsa-mir-1225-3p ; hsa-mir-4323 ; hsa-mir-3141 ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6773-5p ; hsa-mir-6724-5p ; hsa-mir-6071 ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-296-5p ; hsa-mir-6882-3p ; hsa-mir-942-5p ; hsa-mir-3692-5p ; hsa-mir-93-3p ; hsa-mir-130b-5p ; hsa-mir-6728-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-5088-3p ; hsa-mir-6875-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-1224-3p ; hsa-mir-532-3p ; hsa-mir-4281 ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-101-3p ; hsa-mir-2681-5p ; hsa-mir-374a-3p ; hsa-mir-4328 ; hsa-mir-511-5p ; hsa-mir-582-5p ; hsa-mir-6830-3p

Nearest miRNA

hsa-mir-1181/Upstream/366437; hsa-let-7e/Downstream/15573;

Nearest TSS

Nearest CpG islands

chr19-CpG: 287/Target, None/Upstream, None/Downstream

Upstream sequence

CACCACAGCAGATGCCTCCCCTGGAAAAAGCCCGGATTGCGGGCGTGGGTTCCTTGCCGCTGTCTGGGGTAGAGGAGAAGATGTTCAGCCTCCTCAAGAG

Downstream sequence

GAGGCGCCCGCGCGAGGCTGCGGCCCGCGAAGAAGCGCCGAGAAACAAAGGGACGCGGCAGCAgcggcggcgggcccgcggggcctccgggcgcgccccc