VISDB Viral Integration Site DataBase

VIS ID

TVIS10017738

Fusion event

HBV-NBEAL1 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

B

Reference genome

Region type

X protein;Polymerase;

Start

1582

Integrated sequence

TACCGTCCCCTTCTTCGTCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGC| |ACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCGACAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATG

Chromosome

chr2

Cytoband

q33.2

Reference genome

Start

End

203904055/203039332 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-5089-3p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-137 ; hsa-mir-873-3p ; hsa-mir-944 ; hsa-mir-7161-3p ; hsa-mir-3148 ; hsa-mir-3156-5p

Nearest miRNA

hsa-mir-10b/Upstream/13906221; hsa-mir-1244-1/Downstream/3743902;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/24164, chr2-CpG: 78/Downstream/199409

Upstream sequence

tgatctcaagcagtctacccaccacagcctcccaaagtgctgggattacaagcatgagccaccatgcccggccAAATTATTATTATTATTAttttttgaa

Downstream sequence

ccctccttccccctcccctccccttctccttcccttcctttcccttcccTTtcctgtcctgtcctgtcctgtcttgtcctgtcctttccgagatagagtc