VISDB Viral Integration Site DataBase

VIS ID

TVIS10017746

Fusion event

HBV-FIP1L1 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

B

Reference genome

Region type

X protein;Polymerase;

Start

1527

Integrated sequence

CGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGACTCTACCGTCCCCTTCTTCGTCTGCCGTTCCGGCCGACCACGGGGCGC| |ACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGC

Chromosome

chr4

Cytoband

q12

Reference genome

Start

End

54324863/53458696 (Hg38)

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-877-3p

Nearest miRNA

hsa-mir-12113/Upstream/745949; hsa-mir-1243/Downstream/7463923;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/80466, chr4-CpG: 82/Downstream/605378

Nearest cancer related gene

FIP1L1(OG, No orient, 0)

Upstream sequence

TCAAAATGACTACATAAGACATCTTAAAATGCAAATCATTAATATCATCTAATAATTATAATTACCGTAATTCCACACAGATTTTCCTTAAAACTTACCA

Downstream sequence

ATGAGCGTCACAGAGCAAGTCGAGAAAAAGAAGAACGACATAGAGAAAGACGACACAGGGAGAAAGAGGAAACCAGACATAAGTCTTCTCGAAGGTTTGC