VISDB Viral Integration Site DataBase

VIS ID

TVIS10017752

Fusion event

HBV-RBM27 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

B

Reference genome

Region type

X protein;

Start

1792

Integrated sequence

ACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAA| |ATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGC

Chromosome

chr5

Cytoband

q32

Reference genome

Start

End

145588195/146208632 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1226-3p ; hsa-mir-186-5p ; hsa-mir-15b-5p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-let-7a-2-3p ; hsa-mir-96-3p ; hsa-let-7g-3p ; hsa-mir-143-3p ; hsa-mir-576-3p ; hsa-mir-582-5p ; hsa-mir-2681-3p ; hsa-mir-4708-5p ; hsa-mir-4712-3p ; hsa-mir-4770 ; hsa-mir-1273f ; hsa-mir-6088 ; hsa-mir-6516-3p ; hsa-mir-142-3p ; hsa-mir-587 ; hsa-mir-1279 ; hsa-mir-889-3p ; hsa-mir-548p ; hsa-mir-3121-3p ; hsa-mir-3611 ; hsa-mir-92b-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-6809-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-4753-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-197-3p ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-942-5p ; hsa-mir-130b-5p ; hsa-mir-6870-3p ; hsa-mir-5088-3p ; hsa-mir-1910-5p ; hsa-mir-125a-3p ; hsa-mir-500b-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-4482-5p ; hsa-mir-3130-5p ; hsa-mir-628-5p ; hsa-mir-137 ; hsa-mir-8075 ; hsa-mir-4772-5p ; hsa-mir-383-5p ; hsa-mir-5690

Nearest miRNA

hsa-mir-10397/Upstream/2528661; hsa-mir-103a-1/Downstream/2853681;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/4684, chr5-CpG: 22/Downstream/125446

Upstream sequence

tccagtgattcttgtgcctcagcctcctgagtagctgggactacacacacgcaccaccatgctggctaatttttgtatttttagtagagacaggatgtcg

Downstream sequence

GCACAATTTAGAGATGTCATGGTTTCTTTCTGTCAGAAATAACTGCTCATTGTAAGAATGTGAACCCCTTTAAAGTAAGGTTCTGCTAAATTCAGGAAAT