VISDB Viral Integration Site DataBase

VIS ID

TVIS10017758

Fusion event

HBV-ATP11A integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

B

Reference genome

Region type

X protein;

Start

1802

Integrated sequence

ATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGT| |TCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCAT

Chromosome

chr13

Cytoband

q34

Reference genome

Start

End

113538066/112883752 (Hg38)

Location type

3UTR

Target gene

miRNAs that regulate target gene

hsa-mir-744-5p ; hsa-mir-769-5p ; hsa-mir-484 ; hsa-mir-197-3p ; hsa-mir-92a-3p ; hsa-mir-4777-5p ; hsa-mir-523-5p ; hsa-mir-526a ; hsa-mir-522-5p ; hsa-mir-520c-5p ; hsa-mir-519c-5p ; hsa-mir-519b-5p ; hsa-mir-519a-5p ; hsa-mir-518f-5p ; hsa-mir-518e-5p ; hsa-mir-518d-5p ; hsa-mir-337-3p ; hsa-mir-202-5p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-617 ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-770-5p ; hsa-mir-4712-5p ; hsa-mir-211-3p ; hsa-mir-5680 ; hsa-mir-3121-3p

Nearest miRNA

hsa-mir-1267/Upstream/2542723; hsa-mir-4502/Downstream/379168;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/550, chr13-CpG: 20/Downstream/2284

Upstream sequence

GAGAGTTGTAAAAGGCGTCCTCATTATCTTTGCTGGGTTTGGCATCCTCTTTCATGGCCGCTTTAGATAATTGCCTTATGCTGCTAATAACATCAGGAAC

Downstream sequence

CTGGGGGAAAAAATTAAAACCCTGATTCTAGTTGAAAGTTTTGAGACAATTTACATTTACCTAGCCCAATTATTACCACATGGAATGTATTTTCATCCTA