VISDB Viral Integration Site DataBase

VIS ID

TVIS10017763

Fusion event

HBV-TMEM9 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

pre-S1/pre-S2/S;Polymerase;

Start

317

Integrated sequence

TTGACAAGAATCCTCACAATACCACAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCACCCACGTGTCCTGGCCAAAATTTGCAGT| |CCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCT

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

201104510/201135382 (Hg38)

Location type

3UTR

Target gene

miRNAs that regulate target gene

hsa-mir-125b-5p ; hsa-mir-17-5p ; hsa-mir-185-5p ; hsa-mir-31-5p ; hsa-mir-3202 ; hsa-mir-4306 ; hsa-mir-4432 ; hsa-mir-4487 ; hsa-mir-4524a-3p ; hsa-mir-4533 ; hsa-mir-4644 ; hsa-mir-4768-3p ; hsa-mir-505-5p ; hsa-mir-6501-3p ; hsa-mir-665

Nearest miRNA

hsa-mir-101-1/Upstream/2276229; hsa-mir-1182/Downstream/584126;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/19943, chr1-CpG: 44/Downstream/18735

Upstream sequence

CTGGGAAATGATGGGTCAGATAAGGGAGCTACCAAGATTTCCCTaaacacccattgagtgcctactaagtgttggactctgccaggagatggagaaacaa

Downstream sequence

aatgaaaaagacacaatttttgtatttgagaagctcaaagaataaaggaggcagacaggaaaatgatcactaaaacacaGCATGATGTGCACCTTAACCA