hsa-mir-130b-3p _LIHC.png
CCNA2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017768
Fusion event
HBV-CCNA2 integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Region type
X protein;Polymerase;
Start
1413
Integrated sequence
GGCGAAACTGCTCGGCACCGACAACTCTGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGG| |ACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGACTCTACCGTCCCCTTCTTCGTCTGCCGTTCCGGC
Host Sequence
Chromosome
chr4
Cytoband
q27
Reference genome
End
122742542/121821387 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-12113/Upstream/7164533; hsa-mir-1305/Downstream/3685872;
Nearest CpG islands
Upstream sequence
attatcggcgtgagccaccgtgcctggcTGTGTGTGCTTTTTAAATGTTCTCTTCTTTATGAATGGAAGAGTGGGAAGCAGAAGCATGTGGTGTAGTATA
Downstream sequence
GGAGCAAATGGCATGGTGGTTCTGTTAGGACAGAACACTTTTAAAATCCAAGTTTTGAGATAATATCTAAGATTTGTCCCAAGAGAAACTGCAGATCCCA
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.
Curate